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What Late GST/HST Filings Mean For Business Owners

By Barsha Bhattacharya

10 July 2025

5 Mins Read

What happens when you file GST late

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When it comes to GSTs, precaution is always better than a cure. Businesses that remain unaware of the GST regulations often gamble with the empire that they have built. Businesses take generations worth of effort, but one mistake can ruin everything.

Abiding by the regulations saves you from the misadventures of filing your GST late. You should rather wonder about what happens when you file GST late, while you still have time to do so. Experiencing the consequences should not be fruitful.

This article seeks to shed light on what happens when you file GST late. Owners of the businesses should be aware of the consequences of late filing of GST.

For many Canadian business owners, managing Goods and Services Tax/Harmonized Sales Tax (GST/HST) obligations is simply part of the regular accounting cycle. But often filings fall behind, due to cash flow issues, disorganization, or misunderstanding the requirements. However, the consequences grow quickly and substantially. 

The Canada Revenue Agency (CRA) takes late filings seriously. Therefore, business owners who delay their GST/HST filings are often surprised by the quickly accumulating penalties.

Therefore, this leads to far-reaching impacts. Businesses often become overwhelmed by it.

What Happens When You File GST Late, And How Can Expert Opinion Help Avoid Consequences?

Businesses have to manage several things; therefore. Therefore, businesses find it difficult to manage various things altogether.

Owners and management should not forget that everything they have built should also be secured. 

Filing GST late causes your business to suffer; hence, it is wise to take an expert’s opinion.

The businesses should prioritise their late filing penalties as an immediate concern. However, that is not the only concern. Therefore, companies should also be concerned about several other things, like interest charges.

Interest charges apply to unpaid balances, and repeated non-compliance can result in CRA scrutiny or audits. Therefore, businesses often require the expert’s help. This is where guidance from the expert tax lawyers at Taxpage can help.

The expert tax lawyers have experience helping clients navigate CRA enforcement actions and resolve GST/HST disputes. Therefore, the expertise of the lawyers often makes a massive difference. 

Business owners should understand the rules and proactively address late filings, as these are the best steps any business owner can take to ensure compliance.

The experts manage your GST Filings on time while you grow your business. Therefore, this allows the businesses to focus on the more important tasks, while the expert tax lawyers take care of their taxes.

The businesses should rather choose to pay the fees of the expert tax lawyers instead of paying penalties later. 

What Happens When You File GST Late? There Are Multiple Consequences Of Filing GST Late in Canada:

Filing GST Late in Canada comes with multiple consequences, some of which are as follows:

1. Financial Consequences Of Late Filing

The CRA imposes a penalty of 1% of the balance owing when a GST/HST return is not filed by the due date. On the other hand, an additional 0.25% is added for each full month the return is overdue (up to 12 months).

Therefore, this is compounded by daily interest on the outstanding tax amount.

Businesses in a refund position also face these penalties, unless the refund is properly claimed through a filed return.

Businesses experiencing tight cash flow often delay filing to buy time out of temptation. 

However, this plan often quickly backfires. Therefore, consequences often follow.

The CRA does not consider financial hardship a valid excuse for late filing. Therefore, late returns delay access to important tax credits or refunds.

Businesses that delay filings are owed money, but cannot access it until the paperwork is submitted and reviewed in several cases.

2. Compliance Risk And CRA Enforcement

Late GST/HST filings send a signal to the CRA that a business may have underlying accounting or tax compliance issues.

Therefore, an audit or desk review becomes evident for these businesses. 

The CRA uses risk assessment algorithms to prioritize files for enforcement action. Therefore, repeated late filings or prolonged silence trigger closer examination.

Therefore, Enforcement often escalates quickly. The CRA often estimates the tax owing and issues arbitrary assessments based on prior returns or available information.

As a result, these assessments often overstate the tax liability, creating a stressful situation for the business owner.

The authorities immediately enforce GST/HST assessments once issued. Hence, the authorities indulge in collection actions, such as bank garnishments, liens, or asset seizures.

Therefore, this happens when the businesses do not address the issues promptly.

3. Impact On Input Tax Credits And Refunds

Businesses registered for GST/HST should claim Input Tax Credits (ITCs) for the tax paid on eligible purchases.

However, you should file returns within the required timeframe to claim these credits. Late filings result in the denial of ITCs.

The CRA often determines that the documentation is insufficient or the delay is unreasonable due to late filing. 

The loss of ITCs financially damages businesses with high operating costs or capital expenditures.

CRA applies a strict time limit for claiming refunds. Therefore, businesses should go for refund claims within four years from the end of the reporting period. 

Failure to file on time may mean permanently forfeiting those refunds, even when the CRA has acknowledged the underlying transactions.

4. Rebuilding Compliance And Moving Forward

Businesses with late or unfiled GST/HST returns should address the backlog immediately. 

Therefore, businesses should file voluntarily before the CRA initiates contact to limit penalties and may keep the case out of the audit stream. 

Businesses receive relief under the CRA’s Voluntary Disclosures Program (VDP), in some circumstances. Therefore, this can eliminate penalties and reduce interest.

The businesses should maintain accurate records, file on time, and review GST/HST compliance regularly, as these are critical to minimizing their risk. 

Businesses that have fallen behind should avoid further delay and seek professional advice from a tax lawyer to ensure they take the right steps to minimize the impact. 

The longer returns remain outstanding, the more costly the consequences become. Timing is more than a matter of organization; it can directly affect your bottom line.

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Barsha Bhattacharya

Barsha Bhattacharya is a senior content writing executive. As a marketing enthusiast and professional for the past 4 years, writing is new to Barsha. And she is loving every bit of it. Her niches are marketing, lifestyle, wellness, travel and entertainment. Apart from writing, Barsha loves to travel, binge-watch, research conspiracy theories, Instagram and overthink.

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